The gene models and other genome annotation in FlyMine are provided by a variety of source databases including: FlyBase, UniProt, Ensembl and over 30 other data sources. Read more
Query for genes:
Search FlyMine. Enter names, identifiers or keywords for genes, proteins, pathways, ontology terms, authors, etc. (e.g. eve, HIPPO_DROME, glycolysis, hb allele).
Enter a list of identifiers.
FlyMine integrates many types of data for Drosophila, Anopheles and other organisms. You can run flexible queries, export results and analyse lists of data.
Genes |
Interactions |
Homology |
Function |
Regulation |
Expression |
The gene models and other genome annotation in FlyMine are provided by a variety of source databases including: FlyBase, UniProt, Ensembl and over 30 other data sources. Read more
Query for genes:
FlyMine loads physical interactions from IntAct and BioGRID and genetic interactions from FlyBase. Read more
Query for interactions:
FlyMine loads homologue predictions from Ensembl, KEGG and TreeFam. Read more
Query for homology:
FlyMine loads Gene Ontology annotation from MGI, FlyBase, WormBase, UniProt, SGD, and InterPro; domain data from InterPro; disease data from OMIM; and pathways data from Reactome and KEGG. Read more
Query for function:
FlyMine loads transcriptional regulation data from FlyBase and REDFly. Read more
Query for regulation:
TF binding sites + Binding site sequence Transcription Factors Regulatory elements Genes that have binding sites for this factor Regulatory elements in the upstream intergenic region microRNA (miRNA) gene Regulatory elements Gene + Transcription factorFlyMine loads gene expression data for Drosophila melanogaster from FlyAtlas, BDGP, ArrayExpress and Fly-FISH. Read more
Query for expression:
BDGP in situ data FlyAtlas expression data FlyAtlas expression data RNA_seq expression Microarray Time course expression data from Arbeitman et al. Genes Genes FlyAtlas expression data
